Mine

thoughts and notes from a computational biologist

Thursday, September 10, 2020

Making a comfortable dev environment

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Coding? Debugging? Configuring? These are a few simple things that have been very helpful to me and  my colleagues. 1. Bash prompt++.  It he...
Saturday, October 06, 2018

Lyrics for the pop

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This post is about contemporary pop music of which I hear plenty on the way to and from work. If you could care less about the music -- tun...
Thursday, January 05, 2017

2016 in review

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Given some recent changes at Roche , it is unclear when the work I was engaged in will see the light of day. This is not a situation that I...
Monday, August 15, 2016

Graduate school and industry (not versus)

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It has been almost a year now that I have defended my PhD and joined a team at a biotech company instead of further pursuing academic positi...
Sunday, June 12, 2016

Those pesky bugs

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I have found a bug in the code featured in the previous post where some of the reads hitting several anchors were mapped incorrectly. So to...
Tuesday, May 24, 2016

How to align reads -- sparse index

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So, apparently coming up with an aligner for reads -- long, short, or otherwise, is not all that difficult, especially when you have no err...
Tuesday, December 08, 2015

Aligning long reads

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With long reads becoming more popular and accessible, major read aligners responded by providing mapping capabilities that can work with lo...
Saturday, September 05, 2015

Those pesky author lists

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Having recently had to correct a lot of author lists to BibTeX-compliant list format, I wrote a little Javascript to help me do the task: ...
Tuesday, October 21, 2014

The colors of my life

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Inspired by vibrant colors of Indian outfits, I have created a new stylesheet for my MacOS terminal: Juuust enough contrast for me...
Thursday, September 11, 2014

Science communication

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While there is a lot of training in how to communicate ideas clearly to other scientists, the need and specific aspects of speaking to a mo...
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Darya Filippova

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